Looking for a quick and satisfying breakfast that’s easy to prep ahead? This Ham and Cheese Egg Muffins Recipe might just become your new go-to. These protein-packed bites are perfect for busy mornings when you need something you can grab and go, yet still want something homemade and hearty. Made with simple ingredients like eggs, diced ham, shredded cheese, and your favorite veggies, these muffins come together in no time and reheat beautifully.
Whether you’re feeding a crowd for brunch, stocking your fridge with easy weekday breakfasts, or trying to cut back on carbs without sacrificing flavor, this Ham and Cheese Egg Muffins Recipe checks all the boxes. They’re versatile, customizable, and totally delicious. Plus, cleanup is a breeze—especially if you use a non-stick muffin tin or liners. Trust me, once you make a batch, you’ll wonder how you ever did mornings without them! Ready to get started? Let’s get cracking.
Ingredients Needed to Make Ham and Cheese Egg Muffins
Before you start whipping up these delicious little breakfast bites, you’ll want to gather all the right ingredients. The best part about this recipe? It uses simple, everyday staples that you might already have in your kitchen. Let’s break it down.
Eggs
You can’t have egg muffins without eggs! You’ll need about 8 to 10 large eggs, depending on how many muffins you want to make. Eggs provide the base and hold all the ingredients together while adding a healthy dose of protein.
Diced Ham
For that classic breakfast flavor, go with 1 to 1 ½ cups of diced ham. Leftover ham works great, or you can use store-bought pre-diced ham for convenience. This adds a nice, salty bite and pairs perfectly with the cheese.
Shredded Cheese
You’ll need around 1 cup of shredded cheese. Cheddar is a popular choice for its bold flavor and meltability, but feel free to mix in Monterey Jack, Swiss, or even pepper jack if you want to switch things up.
Vegetables (Optional but Recommended)
Adding veggies gives your muffins more texture, color, and nutrients. Some tasty options include:
- ½ cup of diced bell peppers (red, green, or yellow)
- ¼ cup of chopped green onions
- ¼ cup of spinach, chopped finely
You can skip the veggies if you’re going for a simpler version, but they do add a fresh, flavorful twist.
Milk
Adding ¼ cup of milk to the egg mixture helps create a softer, fluffier muffin. Whole milk works best, but any type of milk or even a splash of cream will do the trick.
Seasonings
Keep it easy with a few pantry staples:
- Salt and pepper to taste
- Optional: A pinch of garlic powder or paprika for extra flavor
Non-Stick Spray or Muffin Liners
You’ll want to coat your muffin tin with non-stick spray or use silicone liners to ensure the egg muffins come out clean and easy, with no sticking or mess.
Now that you’ve got your ingredients lined up, you’re just a few steps away from enjoying a batch of warm, cheesy, protein-packed Ham and Cheese Egg Muffins!
How to Make Ham and Cheese Egg Muffins
Making ham and cheese egg muffins is an easy and rewarding process, ideal for busy mornings, weekly meal prep, or even a weekend brunch spread. With just a few ingredients and straightforward steps, you’ll have a batch of warm, cheesy, protein-packed muffins ready in no time. Here’s how to make them from scratch with confidence and ease.
Step 1: Preheat the Oven
Begin by preheating your oven to 375°F (190°C). This temperature ensures the egg muffins cook evenly and develop a light golden top without drying out. It’s important to let the oven fully preheat before baking, so the muffins rise properly and bake through consistently. While the oven is heating up, you can move on to preparing your ingredients and muffin tin.
Step 2: Prepare Your Muffin Tin
Next, get your muffin tin ready. You’ll need a standard 12-cup muffin pan. Lightly grease each cup with non-stick cooking spray to prevent sticking, or use silicone or paper liners if you prefer an easier cleanup. Since egg mixtures can cling to the sides, this step is essential for a smooth release once the muffins are baked. Silicone liners are a great reusable option and make popping out the muffins effortless.
Step 3: Dice Your Ingredients
While the oven is warming up, take a few minutes to prep your mix-ins. Dice your ham into small cubes, chop any veggies you’re using—such as bell peppers, green onions, or spinach—and shred your cheese. Aim for uniform sizes so the ingredients mix well and bake evenly. You can use leftover ham, deli ham, or even pre-diced ham to save time. If you like a bit of spice, feel free to add a few chopped jalapeños or a dash of chili flakes for extra flavor.
Step 4: Make the Egg Mixture
In a large mixing bowl, crack 8 to 10 large eggs and whisk them until the yolks and whites are fully combined. This is the base of your egg muffins. To the eggs, add ¼ cup of milk to help make the texture soft and fluffy. Season the mixture with a pinch of salt and pepper, and if desired, include a bit of garlic powder, paprika, or your favorite spice blend for added depth. Once seasoned, stir in your diced ham, shredded cheese, and any chopped vegetables. Mix gently until all the ingredients are evenly distributed throughout the egg base.
Step 5: Fill the Muffin Cups
Now it’s time to assemble. Using a ladle, measuring cup, or large spoon, carefully pour the egg mixture into each prepared muffin cup. Fill each one about three-quarters full to allow space for the muffins to rise slightly as they bake. Try to distribute the fillings evenly so each muffin has a good mix of ham, cheese, and veggies. If you notice some ingredients settling at the bottom of the bowl, give the mixture a gentle stir between scoops.
Step 6: Bake Until Set
Place the muffin tin on the middle rack of your preheated oven and bake for 20 to 25 minutes. The muffins are done when the tops are lightly golden, the centers are set, and a toothpick inserted in the middle comes out clean. Keep an eye on them during the final few minutes to avoid overbaking. If your oven runs hot or cool, you might need to adjust the time slightly.
Step 7: Let Them Cool Slightly
Once baked, remove the muffin tin from the oven and let the muffins cool in the pan for about 5 to 10 minutes. This cooling time allows the muffins to firm up slightly, making them easier to remove from the tin. Use a butter knife to gently loosen the edges if needed, then transfer the muffins to a wire rack or plate to finish cooling.
Step 8: Serve or Store
These ham and cheese egg muffins are delicious served warm right out of the oven, but they also make excellent leftovers. You can store them in an airtight container in the refrigerator for up to five days. For longer storage, wrap each muffin individually in plastic wrap and freeze them in a zip-top bag for up to two months. When you’re ready to eat, simply reheat in the microwave for 30–45 seconds from the fridge, or about 60–75 seconds if frozen. They reheat beautifully and taste just as good as when freshly made.
Bonus Tips for Perfect Egg Muffins
To make this recipe your own, feel free to get creative with ingredients. You can swap out the ham for cooked bacon or sausage, or try different cheeses like Swiss, mozzarella, or pepper jack. Want to make them vegetarian? Just skip the meat and load up on veggies like mushrooms, tomatoes, or kale.
If you’re avoiding dairy, you can leave out the cheese or use a dairy-free version. You can even make these in a mini muffin tin for bite-sized snacks or appetizers—just reduce the baking time to about 12–15 minutes. With endless possibilities, this ham and cheese egg muffins recipe is sure to become a staple in your kitchen.
Tips for the Best Egg Muffins
Egg muffins might seem like a simple recipe—and they are!—but a few smart tips can take them from good to absolutely delicious. Whether you’re a first-timer or a meal-prep pro, these tips will help you make egg muffins that are fluffy, flavorful, and never soggy.
Always Grease the Muffin Tin Well
Eggs tend to stick, even in non-stick pans, so make sure you grease each cup generously with cooking spray, butter, or oil. You can also use silicone muffin liners, which pop the muffins out effortlessly and are reusable. Paper liners can work in a pinch, but they may stick to the egg slightly.
Use a Base of Fresh Eggs and Milk
For the fluffiest egg muffins, stick to a ratio of about 1 tablespoon of milk per egg. The milk helps lighten the texture and gives them a creamier bite. Don’t overdo it, though—too much liquid can make them soggy. Whole milk or even half-and-half works well for a richer flavor, while dairy-free milk alternatives can be used if needed.
Chop Ingredients into Small, Even Pieces
The goal is to have a little bit of everything in each bite. Dice your ham, cheese, and veggies into small, uniform pieces. If you’re using ingredients with high water content—like tomatoes, mushrooms, or spinach—consider sautéing them first to reduce moisture. This step helps prevent the muffins from becoming watery or collapsing after baking.
Season Wisely
Eggs need seasoning to really shine. A simple pinch of salt and pepper goes a long way, but don’t be afraid to add more flavor. Try paprika, garlic powder, onion powder, Italian seasoning, or even a touch of hot sauce or mustard in the egg mixture. Fresh herbs like parsley or chives also add great flavor without overpowering the dish.
Don’t Overfill the Cups
When filling your muffin tin, aim to fill each cup about three-quarters full. This gives the egg mixture enough room to rise slightly without overflowing. Overfilling may lead to spillage and uneven cooking.
Let Them Cool Before Removing
Once the egg muffins are out of the oven, let them cool in the tin for 5–10 minutes before trying to remove them. This allows the muffins to firm up, making them easier to release without breaking. A butter knife or small spatula can help gently loosen the edges.
Store and Reheat Properly
Egg muffins store well in the fridge for up to five days and freeze for up to two months. For best results, wrap them individually before freezing to prevent freezer burn. To reheat, microwave refrigerated muffins for about 30 seconds, or frozen ones for about 60–75 seconds. You can also reheat them in the oven at 350°F for 8–10 minutes for a slightly crisp edge.
With these easy tips, your ham and cheese egg muffins will come out perfectly every time—fluffy, flavorful, and ready to power your day.
Variations to Try
One of the best things about ham and cheese egg muffins is how customizable they are. Once you master the basic recipe, the possibilities are endless. Whether you want to adjust for dietary needs, switch up the flavors, or simply use what’s already in your fridge, these easy variations will keep breakfast exciting and fresh.
Vegetarian Egg Muffins
Skip the ham and load up on colorful veggies. Great choices include chopped bell peppers, spinach, onions, mushrooms, zucchini, or cherry tomatoes. For added flavor, sauté the veggies beforehand to bring out their sweetness and remove excess moisture. You can also sprinkle in some fresh herbs like basil, dill, or chives for a fragrant, garden-fresh taste.
Bacon or Sausage Swaps
If you prefer a different protein, swap the ham for cooked bacon, crumbled breakfast sausage, or even turkey sausage. Just make sure the meat is fully cooked and drained of any grease before adding it to your egg mixture. Smoked meats add a bold, savory flavor that pairs well with mild cheeses.
Different Cheese Combinations
While cheddar is a classic, don’t be afraid to explore other cheeses. Mozzarella gives a stretchy, melty texture. Swiss adds a nutty flavor, while feta brings a salty, tangy kick. Pepper jack is perfect if you like a bit of heat. You can even mix two or three cheeses together for a richer, layered flavor profile.
Low-Carb or Keto-Friendly
Egg muffins are naturally low in carbs, but you can keep them keto-friendly by focusing on proteins and high-fat ingredients. Use heavy cream instead of milk, and include keto-approved veggies like spinach, broccoli, mushrooms, and zucchini. Top with extra cheese and avocado slices after baking for a filling, high-fat breakfast.
Spicy Kick
If you enjoy bold flavors, give your muffins a spicy twist. Add diced jalapeños, red pepper flakes, or a splash of hot sauce into the egg mixture. You can also use spicy sausage or pepper jack cheese to increase the heat. Garnish with a little sriracha or spicy salsa before serving.
Mini Muffins for Snacking
Make these in a mini muffin tin to create bite-sized snacks or party-friendly finger food. The process is the same—just reduce the baking time to around 12–15 minutes. These make excellent grab-and-go snacks, lunchbox fillers, or high-protein appetizers for gatherings.
Dairy-Free or Paleo Options
For those avoiding dairy, skip the cheese and milk or use dairy-free alternatives like almond milk and vegan cheese. The muffins will still set nicely, though they may have a slightly different texture. Stick to whole foods like veggies and lean meats to keep things paleo-compliant.
Sweet and Savory Twist
Looking for something unique? Try combining a hint of sweetness with savory flavors. Add a dash of maple syrup to the egg mixture and pair ham with a sharp cheese like aged cheddar. You can even experiment with a few diced apples or caramelized onions for contrast.
With these variations, you can turn the humble ham and cheese egg muffins into a recipe that fits any mood, preference, or pantry situation. Don’t be afraid to get creative—egg muffins are incredibly forgiving, and each batch is a chance to discover a new favorite flavor combo.
How to Store and Freeze Egg Muffins
One of the best things about egg muffins is how well they store and reheat. Whether you’re prepping breakfast for the week or freezing extras for later, ham and cheese egg muffins are incredibly convenient. With the right storage tips, you’ll keep them tasting fresh, flavorful, and ready to grab whenever hunger strikes.
Storing Egg Muffins in the Refrigerator
If you plan to eat your egg muffins within a few days, the refrigerator is the way to go. After baking, let the muffins cool completely at room temperature. This step is important—storing them while still warm can trap steam, making them soggy.
Once cooled, place the muffins in an airtight container. You can stack them with parchment or wax paper between layers to prevent sticking. They’ll stay fresh in the fridge for up to 5 days.
When you’re ready to eat, simply microwave each muffin for 20–30 seconds until warmed through. You can also reheat them in a toaster oven at 350°F for about 8–10 minutes if you prefer a slightly crispy edge.
Freezing Egg Muffins for Long-Term Storage
Egg muffins freeze beautifully, which makes them a perfect make-ahead breakfast. Here’s how to do it right:
- Cool completely – Just like with refrigeration, let the muffins cool fully to prevent moisture buildup in the freezer.
- Wrap individually – For best results, wrap each muffin tightly in plastic wrap or aluminum foil. This helps protect against freezer burn.
- Use a freezer-safe bag or container – After wrapping, place the muffins in a large zip-top freezer bag or an airtight container. Label it with the date so you know how long they’ve been stored.
- Freeze for up to 2 months – For the best flavor and texture, enjoy your frozen egg muffins within two months.
Reheating Frozen Egg Muffins
When it’s time to enjoy your frozen muffins, reheating is quick and easy:
- Microwave – Unwrap the muffin and place it on a microwave-safe plate. Heat on high for 60–90 seconds, or until heated through. If it feels slightly cold in the center, add 10-second intervals until it’s hot.
- Oven – Preheat your oven to 350°F. Place the muffins (unwrapped) on a baking sheet and heat for 15–20 minutes. This method is great if you’re reheating several muffins at once.
Helpful Tips
- Avoid refreezing thawed muffins, as the texture may suffer.
- For quick mornings, place a few muffins in the fridge the night before to thaw and shorten the reheating time.
- Add a sprinkle of fresh cheese or herbs on top after reheating to freshen up the flavor.
With proper storage, your ham and cheese egg muffins will stay just as delicious as the day you made them—perfect for busy mornings, post-workout snacks, or whenever you need a protein-packed bite.
Serving Suggestions
Ham and cheese egg muffins are incredibly versatile and can be enjoyed in so many ways beyond just grabbing one on the go. They make a hearty breakfast when paired with a slice of whole-grain toast, some avocado, or a small fruit salad. For a low-carb option, serve them alongside sautéed spinach or roasted veggies to create a balanced, protein-packed plate. If you’re hosting a brunch, egg muffins can be a star on a breakfast buffet. Arrange them on a platter with mini bagels, fresh berries, and yogurt parfaits for a colorful, inviting spread that’s easy to assemble and even easier to eat.
They also make a great addition to lunchboxes. Toss a couple into a lunch container with baby carrots, hummus, and some crackers for a nutritious midday meal. For kids, consider cutting the muffins into halves or quarters to make them more bite-sized and fun. You can even transform them into a breakfast sandwich by slicing one in half and layering it with a tomato slice or a piece of lettuce between an English muffin or mini bagel.
Egg muffins are equally delicious warm or at room temperature, which makes them great for picnics, road trips, or post-workout snacks. Sprinkle a little hot sauce or salsa on top for an extra flavor boost, or add a dollop of sour cream or guacamole for a creamy twist. However you choose to serve them, these egg muffins are sure to fit right into your routine with ease and flavor.
FAQs
What Are Ham and Cheese Egg Muffins?
Ham and cheese egg muffins are individual, baked egg cups that combine scrambled eggs with chunks of ham, melted cheese, and often other ingredients like vegetables or seasonings. They’re a delicious, portable breakfast option that’s easy to prepare, making them perfect for meal prep.
You can customize the recipe by adding your favorite veggies, meats, or cheeses, and they’re a great way to use up leftovers. These egg muffins are high in protein and perfect for busy mornings when you need a quick, filling meal.
Can I Make Ham and Cheese Egg Muffins Ahead of Time?
Yes! One of the best things about ham and cheese egg muffins is that they can be made ahead of time. After baking, you can store them in the refrigerator for up to 5 days or freeze them for longer storage. If you’re meal prepping, these egg muffins are a fantastic choice because they reheat quickly in the microwave or oven, so you can enjoy them throughout the week.
Simply prepare a batch over the weekend, and you’ll have a convenient, nutritious breakfast ready to go all week long.
What Is The Best Cheese To Use For Ham and Cheese Egg Muffins?
Cheddar cheese is a classic choice for ham and cheese egg muffins, as its sharp flavor pairs perfectly with the salty ham. However, you can experiment with other types of cheese, such as Swiss, mozzarella, or even pepper jack for a bit of spice. Mixing two or more cheeses, like cheddar and Monterey Jack, can also give your muffins a richer flavor. Just make sure the cheese melts well to create a smooth, gooey texture in each muffin.
Can I Make Ham and Cheese Egg Muffins Without Ham?
Absolutely! You can easily make a vegetarian version of egg muffins by omitting the ham and adding extra vegetables, such as spinach, bell peppers, mushrooms, or onions. You can also substitute ham with other proteins like cooked bacon, sausage, or even cooked chicken if you want a different flavor profile. The beauty of these muffins is that they are highly customizable to suit your dietary preferences or what you have on hand.
How Do I Prevent My Egg Muffins From Sticking to The Muffin Tin?
To prevent your ham and cheese egg muffins from sticking, it’s essential to grease your muffin tin generously with cooking spray or butter before pouring in the egg mixture. Alternatively, using silicone muffin liners can make it even easier to remove the muffins once they’re baked. If you’re using paper liners, be sure to spray them lightly with cooking spray as well to avoid sticking.
How Long Do Ham and Cheese Egg Muffins Need To Bake?
Ham and cheese egg muffins typically bake in about 18 to 20 minutes at 350°F (175°C). However, baking time may vary slightly depending on your oven and the size of your muffin tin. The muffins are done when the egg mixture is fully set and no longer jiggly in the center. You can check them by gently pressing the center with a fork or your finger—it should feel firm, not soft.
Can I Freeze Ham and Cheese Egg Muffins?
Yes, ham and cheese egg muffins freeze very well. To freeze them, allow the muffins to cool completely, then wrap each one individually in plastic wrap or aluminum foil. Place the wrapped muffins in a freezer-safe bag or container. They can be frozen for up to 2 months. To reheat, microwave them for 60-90 seconds, or bake them in the oven at 350°F for about 15-20 minutes.
Can I Add Other Ingredients to My Ham and Cheese Egg Muffins?
Definitely! Ham and cheese egg muffins are highly versatile, and you can add whatever ingredients you like. Some great additions include sautéed onions, spinach, mushrooms, or diced bell peppers. If you prefer a bit of spice, try adding jalapeños or chili flakes. You can also experiment with different meats like turkey sausage or bacon. The options are endless, so feel free to get creative based on your taste preferences or what you have available in your kitchen.
Conclusion
Ham and cheese egg muffins are a fantastic, versatile breakfast option that’s both easy to make and customize. Whether you’re looking for a quick grab-and-go meal, a make-ahead breakfast, or a way to use up leftovers, these egg muffins are the perfect solution.
With a balance of protein and flavor, they’re not only satisfying but also highly adaptable to suit your dietary preferences. From swapping in different cheeses and meats to adding vegetables or spice, the variations are endless. Plus, they store well in the fridge and freezer, making them an ideal meal prep option.
So, whether you enjoy them fresh from the oven or reheated later, ham and cheese egg muffins will quickly become a go-to favorite in your kitchen. Enjoy experimenting with different ingredients and flavors to find your perfect combination!